If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ), 'gf_id' => 'HOM05D000666', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000666' ), 'data_identifier' => 'HOM05D000666', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000666', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '858', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p42220' => 'bna', 'A02p06550' => 'bna', 'A03p00980' => 'bna', 'A03p11290' => 'bna', 'A03p20430' => 'bna', 'A03p35860' => 'bna', 'A05p08760' => 'bna', 'A06p09370' => 'bna', 'A06p27890' => 'bna', 'A07p31410' => 'bna', 'A09p46360' => 'bna', 'A10p32840' => 'bna', 'Aa31LG10G8530' => 'aar', 'Aa31LG1G12370' => 'aar', 'Aa31LG1G22010' => 'aar', 'Aa31LG3G2100' => 'aar', 'Aa31LG5G22360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.151' => 'aag', 'Actinidia03027' => 'ach', 'Actinidia03751' => 'ach', 'Actinidia05270' => 'ach', 'Actinidia07108' => 'ach', 'Actinidia11224' => 'ach', 'Actinidia11226' => 'ach', 'Actinidia13104' => 'ach', 'Actinidia19713' => 'ach', 'Actinidia19714' => 'ach', 'Actinidia38247' => 'ach', 'Ah.01g014890' => 'amhyb', 'Ah.10g033060' => 'amhyb', 'Ah.11g043190' => 'amhyb', 'Ah.13g076380' => 'amhyb', 'Ah.15g092120' => 'amhyb', 'AL3G20890' => 'aly', 'AL4G33430' => 'aly', 'AL5G34260' => 'aly', 'AL6G12250' => 'aly', 'AL8G36820' => 'aly', 'Aqoxy2G01872' => 'aox', 'Aqoxy2G01874' => 'aox', 'Aqoxy3G02058' => 'aox', 'Aqoxy4G03195' => 'aox', 'Aqoxy4G03196' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3WQI06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LM4TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZR215' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAN9CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AU6MTG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K4NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2L54K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3522P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJ42P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKK73R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB4B3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9H47S' => 'arhy', 'AT2G37080' => 'ath', 'AT3G09680' => 'ath', 'AT3G53350' => 'ath', 'AT5G02960' => 'ath', 'AT5G60210' => 'ath', 'ATR0730G068' => 'atr', 'ATR1159G031' => 'atr', 'ATR1159G041' => 'atr', 'Atru.chr12.639' => 'acertr', 'Atru.chr2.2762' => 'acertr', 'Atru.chr3.3716' => 'acertr', 'Atru.chr3.3717' => 'acertr', 'Atru.chr3.3718' => 'acertr', 'Atru.chr8.2557' => 'acertr', 'Atru.chr8.2558' => 'acertr', 'AUR62004917' => 'cqu', 'AUR62006504' => 'cqu', 'AUR62010460' => 'cqu', 'AUR62011168' => 'cqu', 'AUR62011879' => 'cqu', 'AUR62013609' => 'cqu', 'AUR62014231' => 'cqu', 'AUR62015129' => 'cqu', 'AUR62019695' => 'cqu', 'AUR62020793' => 'cqu', 'AUR62020794' => 'cqu', 'AUR62021014' => 'cqu', 'AUR62024184' => 'cqu', 'AUR62024984' => 'cqu', 'AUR62024985' => 'cqu', 'AUR62025028' => 'cqu', 'AUR62025292' => 'cqu', 'AUR62026891' => 'cqu', 'AUR62027060' => 'cqu', 'AUR62027911' => 'cqu', 'AUR62027912' => 'cqu', 'AUR62034125' => 'cqu', 'AUR62038466' => 'cqu', 'AUR62040022' => 'cqu', 'AUR62043154' => 'cqu', 'BcaB01g00143' => 'bca', 'BcaB01g00285' => 'bca', 'BcaB01g00286' => 'bca', 'BcaB01g00287' => 'bca', 'BcaB01g00288' => 'bca', 'BcaB01g01637' => 'bca', 'BcaB01g03791' => 'bca', 'BcaB01g04645' => 'bca', 'BcaB01g05864' => 'bca', 'BcaB02g09305' => 'bca', 'BcaB03g11590' => 'bca', 'BcaB03g14748' => 'bca', 'BcaB03g15499' => 'bca', 'BcaB05g21857' => 'bca', 'BcaB05g21859' => 'bca', 'BcaB05g22628' => 'bca', 'BcaB05g23978' => 'bca', 'BcaB06g27128' => 'bca', 'BcaB07g32978' => 'bca', 'BcaB08g35915' => 'bca', 'BcaC01g04243' => 'bca', 'BcaC01g05630' => 'bca', 'BcaC02g11693' => 'bca', 'BcaC02g11833' => 'bca', 'BcaC03g13039' => 'bca', 'BcaC03g13986' => 'bca', 'BcaC03g16911' => 'bca', 'BcaC04g19666' => 'bca', 'BcaC04g19667' => 'bca', 'BcaC06g32022' => 'bca', 'BcaC07g38662' => 'bca', 'BcaC07g39707' => 'bca', 'BcaC08g45868' => 'bca', 'BcaC08g46418' => 'bca', 'BcaC09g48132' => 'bca', 'BcaNung04730' => 'bca', 'BolC1t05442H' => 'bol', 'BolC2t06071H' => 'bol', 'BolC2t07278H' => 'bol', 'BolC2t10845H' => 'bol', 'BolC3t12686H' => 'bol', 'BolC3t13763H' => 'bol', 'BolC3t14793H' => 'bol', 'BolC3t16621H' => 'bol', 'BolC4t22680H' => 'bol', 'BolC4t22875H' => 'bol', 'BolC4t23942H' => 'bol', 'BolC6t38775H' => 'bol', 'BolC6t39424H' => 'bol', 'BolC8t50473H' => 'bol', 'BolC9t60107H' => 'bol', 'BraA01t04290Z' => 'bra', 'BraA02t04738Z' => 'bra', 'BraA02t05738Z' => 'bra', 'BraA02t08075Z' => 'bra', 'BraA03t09480Z' => 'bra', 'BraA03t10441Z' => 'bra', 'BraA03t11286Z' => 'bra', 'BraA03t12759Z' => 'bra', 'BraA05t19844Z' => 'bra', 'BraA06t25729Z' => 'bra', 'BraA07t30776Z' => 'bra', 'BraA09t40101Z' => 'bra', 'BraA10t45321Z' => 'bra', 'C02p00730' => 'bna', 'C02p11840' => 'bna', 'C02p48130' => 'bna', 'C03p01270' => 'bna', 'C03p13000' => 'bna', 'C03p24020' => 'bna', 'C03p43510' => 'bna', 'C03p59130' => 'bna', 'C04p10880' => 'bna', 'C04p12290' => 'bna', 'C04p24470' => 'bna', 'C06p36660' => 'bna', 'C06p43490' => 'bna', 'C08p08440' => 'bna', 'C08p28680' => 'bna', 'C09p12680' => 'bna', 'C09p28260' => 'bna', 'C09p73740' => 'bna', 'CAN.G1171.2' => 'can', 'CAN.G552.2' => 'can', 'CAN.G608.10' => 'can', 'CAN.G608.3' => 'can', 'CAN.G915.11' => 'can', 'CAN.G915.8' => 'can', 'CAN.G915.9' => 'can', 'CAN.G933.6' => 'can', 'CAN.G933.7' => 'can', 'CANSAT21G2168' => 'cansat', 'CANSAT54G0448' => 'cansat', 'CANSAT78G2269' => 'cansat', 'CANSAT80G0496' => 'cansat', 'CARHR084100' => 'chi', 'CARHR105370' => 'chi', 'CARHR118670' => 'chi', 'CARHR131590' => 'chi', 'CARHR163220' => 'chi', 'CARHR210330' => 'chi', 'CARHR273890' => 'chi', 'Carub.0003s0877' => 'cru', 'Carub.0004s1896' => 'cru', 'Carub.0005s1878' => 'cru', 'Carub.0005s1990' => 'cru', 'Carub.0006s0176' => 'cru', 'Carub.0008s2096' => 'cru', 'Ca_01435_v3' => 'car', 'Ca_08826_v3' => 'car', 'Ca_08827_v3' => 'car', 'Ca_11452_v3' => 'car', 'Ca_11453_v3' => 'car', 'Ca_22405_v3' => 'car', 'Ca_22809_v3' => 'car', 'Ca_27410_v3' => 'car', 'Ca_28261_v3' => 'car', 'CBR_g26483' => 'cbr', 'Cc01_g11650' => 'ccan', 'Cc01_g11660' => 'ccan', 'Cc06_g03570' => 'ccan', 'Cc11_g02980' => 'ccan', 'CDE02G3314' => 'cde', 'CDE05G3188' => 'cde', 'CDE06G2548' => 'cde', 'CDE07G0113' => 'cde', 'CDE09G1283' => 'cde', 'Cfa001594' => 'cfa', 'Cfa011374' => 'cfa', 'Cfa017510' => 'cfa', 'Ciclev10003318m.g' => 'ccl', 'Ciclev10011300m.g' => 'ccl', 'Ciclev10013057m.g' => 'ccl', 'Ciclev10027972m.g' => 'ccl', 'Ciclev10029532m.g' => 'ccl', 'CiPaw.01G276600' => 'cil', 'CiPaw.02G176600' => 'cil', 'CiPaw.05G094600' => 'cil', 'CiPaw.09G179900' => 'cil', 'CiPaw.10G137400' => 'cil', 'CiPaw.12G009600' => 'cil', 'CiPaw.13G106000' => 'cil', 'CiPaw.14G077200' => 'cil', 'CiPaw.15G113500' => 'cil', 'ClCG02G020860' => 'cla', 'ClCG02G020880' => 'cla', 'ClCG03G002420' => 'cla', 'ClCG04G008820' => 'cla', 'ClCG09G020430' => 'cla', 'ClCG10G020540' => 'cla', 'ClCG10G020550' => 'cla', 'COL.COLO4_25260' => 'col', 'COL.COLO4_27078' => 'col', 'Cpa.g.sc114.25' => 'cpa', 'Cpa.g.sc114.39' => 'cpa', 'Cpa.g.sc318.2' => 'cpa', 'Cpa.g.sc45.32' => 'cpa', 'Cpa.g.sc53.19' => 'cpa', 'Cre12.g504200' => 'cre', 'CsaV3_1G013090' => 'csa', 'CsaV3_3G035560' => 'csa', 'CsaV3_3G035570' => 'csa', 'CsaV3_4G024320' => 'csa', 'CsaV3_5G025990' => 'csa', 'CsaV3_6G021530' => 'csa', 'CsaV3_6G021550' => 'csa', 'CSS0002503' => 'camsi', 'CSS0010291' => 'camsi', 'CSS0014481' => 'camsi', 'CSS0015152' => 'camsi', 'CSS0015832' => 'camsi', 'CSS0020363' => 'camsi', 'CSS0022751' => 'camsi', 'CSS0026079' => 'camsi', 'CSS0032190' => 'camsi', 'CSS0033261' => 'camsi', 'CSS0034836' => 'camsi', 'CSS0042511' => 'camsi', 'CSS0042736' => 'camsi', 'CSS0046963' => 'camsi', 'CSS0047907' => 'camsi', 'CSS0049299' => 'camsi', 'CSS0050167' => 'camsi', 'DCAR_002495' => 'dca', 'DCAR_006038' => 'dca', 'DCAR_014963' => 'dca', 'DCAR_017730' => 'dca', 'DCAR_020873' => 'dca', 'DCAR_020874' => 'dca', 'Dinv01987' => 'din', 'Dinv11810' => 'din', 'Dinv31343' => 'din', 'Dinv32802' => 'din', 'Dinv32803' => 'din', 'Dinv35710' => 'din', 'Dinv35711' => 'din', 'Dinv37253' => 'din', 'Dinv37254' => 'din', 'Duzib093G0204' => 'dzi', 'Duzib093G0216' => 'dzi', 'Duzib106G0137' => 'dzi', 'Duzib106G0532' => 'dzi', 'Duzib114G0998' => 'dzi', 'Duzib128G0466' => 'dzi', 'Duzib128G0815' => 'dzi', 'Duzib150G1393' => 'dzi', 'Duzib168G0376' => 'dzi', 'Duzib170G0124' => 'dzi', 'ECA233G2621' => 'eca', 'ECA233G4628' => 'eca', 'ECA233G5130' => 'eca', 'ECA238G2634' => 'eca', 'ECA238G3371' => 'eca', 'EL10Ac7g17352' => 'bvu', 'EL10Ac7g17354' => 'bvu', 'EL10Ac9g22420' => 'bvu', 'Eucgr.B02460' => 'egr', 'Eucgr.K03200' => 'egr', 'Eucgr.K03211' => 'egr', 'Eucgr.K03212' => 'egr', 'FAN05G1417' => 'fan', 'FAN05G3487' => 'fan', 'FAN08G1854' => 'fan', 'FAN09G4646' => 'fan', 'FAN11G0949' => 'fan', 'FAN11G3675' => 'fan', 'FAN13G0857' => 'fan', 'FAN14G2440' => 'fan', 'FAN14G4705' => 'fan', 'FAN16G1932' => 'fan', 'FAN16G2424' => 'fan', 'FAN18G3301' => 'fan', 'FAN21G0691' => 'fan', 'FAN21G1729' => 'fan', 'FAN21G1957' => 'fan', 'FAN25G0325' => 'fan', 'FAN25G0821' => 'fan', 'FvH4_3g33632' => 'fve', 'FvH4_3g33640' => 'fve', 'FvH4_4g04890' => 'fve', 'FvH4_5g32110' => 'fve', 'FvH4_6g15372' => 'fve', 'FvH4_6g27250' => 'fve', 'Glyma.03G178000' => 'gma', 'Glyma.03G178100' => 'gma', 'Glyma.10G049400' => 'gma', 'Glyma.10G049600' => 'gma', 'Glyma.11G151706' => 'gma', 'Glyma.11G151915' => 'gma', 'Glyma.12G072200' => 'gma', 'Glyma.12G072300' => 'gma', 'Glyma.13G137100' => 'gma', 'Glyma.13G137200' => 'gma', 'Glyma.13G328900' => 'gma', 'Glyma.15G044900' => 'gma', 'Glyma.19G178800' => 'gma', 'Glyma.19G178900' => 'gma', 'Gohir.A01G217000' => 'ghi', 'Gohir.A01G217100' => 'ghi', 'Gohir.A04G076700' => 'ghi', 'Gohir.A05G075000' => 'ghi', 'Gohir.A05G297900' => 'ghi', 'Gohir.A09G105600' => 'ghi', 'Gohir.A09G151900' => 'ghi', 'Gohir.A09G152000' => 'ghi', 'Gohir.A11G324766' => 'ghi', 'Gohir.A13G088350' => 'ghi', 'Gohir.D01G205700' => 'ghi', 'Gohir.D01G205800' => 'ghi', 'Gohir.D04G115700' => 'ghi', 'Gohir.D05G077800' => 'ghi', 'Gohir.D05G297700' => 'ghi', 'Gohir.D09G102400' => 'ghi', 'Gohir.D09G147500' => 'ghi', 'Gohir.D09G147600' => 'ghi', 'Gohir.D13G096100' => 'ghi', 'Gorai.001G248300' => 'gra', 'Gorai.002G250100' => 'gra', 'Gorai.002G250200' => 'gra', 'Gorai.004G066300' => 'gra', 'Gorai.006G121200' => 'gra', 'Gorai.006G168600' => 'gra', 'Gorai.006G168700' => 'gra', 'Gorai.009G079300' => 'gra', 'Gorai.009G315000' => 'gra', 'Gorai.009G420300' => 'gra', 'GSVIVG01016341001' => 'vvi', 'GSVIVG01025120001' => 'vvi', 'GSVIVG01025121001' => 'vvi', 'GSVIVG01025626001' => 'vvi', 'GSVIVG01025630001' => 'vvi', 'HanXRQChr02g0051921' => 'han', 'HanXRQChr02g0051941' => 'han', 'HanXRQChr07g0195651' => 'han', 'HanXRQChr07g0195661' => 'han', 'HanXRQChr08g0214091' => 'han', 'HanXRQChr13g0399741' => 'han', 'HanXRQChr13g0401761' => 'han', 'HanXRQChr14g0454671' => 'han', 'HanXRQChr14g0454681' => 'han', 'HanXRQChr16g0523521' => 'han', 'Haze_16936' => 'cav', 'Haze_20647' => 'cav', 'Haze_23938' => 'cav', 'Haze_23939' => 'cav', 'Hma1.2p1_0350F.1_g132750' => 'hma', 'Hma1.2p1_2156F.1_g315400' => 'hma', 'HPP92_001036' => 'vpl', 'HPP92_001037' => 'vpl', 'HPP92_001038' => 'vpl', 'HPP92_012057' => 'vpl', 'HPP92_012058' => 'vpl', 'HPP92_019801' => 'vpl', 'Hund08173' => 'sun', 'Hund19332' => 'sun', 'Hund20157' => 'sun', 'Hund20172' => 'sun', 'Hund22475' => 'sun', 'Lalb_Chr01g0004121' => 'lal', 'Lalb_Chr01g0019011' => 'lal', 'Lalb_Chr01g0019021' => 'lal', 'Lalb_Chr02g0153651' => 'lal', 'Lalb_Chr02g0156341' => 'lal', 'Lalb_Chr03g0027061' => 'lal', 'Lalb_Chr06g0171421' => 'lal', 'Lalb_Chr06g0171431' => 'lal', 'Lalb_Chr14g0374821' => 'lal', 'Lalb_Chr19g0137441' => 'lal', 'Lalb_Chr19g0137451' => 'lal', 'Lalb_Chr20g0112971' => 'lal', 'Lalb_Chr21g0314661' => 'lal', 'Lalb_Chr21g0314691' => 'lal', 'Lalb_Chr24g0394421' => 'lal', 'Lalb_Chr25g0289261' => 'lal', 'Lj1A183T51' => 'lonja', 'Lj1g0024319' => 'lja', 'Lj2A107T63' => 'lonja', 'Lj2A698T20' => 'lonja', 'Lj2C1038G2' => 'lonja', 'Lj2C1038T4' => 'lonja', 'Lj3C979G16' => 'lonja', 'Lj3E979T3' => 'lonja', 'Lj3g0000964' => 'lja', 'Lj3g0007552' => 'lja', 'Lj3g0014525' => 'lja', 'Lj3g0015919' => 'lja', 'Lj3g0023755' => 'lja', 'Lj3g0027820' => 'lja', 'Lj5g0006568' => 'lja', 'Lj5g0021378' => 'lja', 'Lj6A416T22' => 'lonja', 'Lj6C379G4' => 'lonja', 'Lj8A625G15' => 'lonja', 'Lj8A631T23' => 'lonja', 'Lju857A12T56' => 'lonja', 'Lsat_1_v5_gn_1_53901' => 'lsa', 'Lsat_1_v5_gn_2_109580' => 'lsa', 'Lsat_1_v5_gn_2_109600' => 'lsa', 'Lsat_1_v5_gn_2_25400' => 'lsa', 'Lsat_1_v5_gn_6_24000' => 'lsa', 'Lsat_1_v5_gn_6_29681' => 'lsa', 'Lsat_1_v5_gn_6_29721' => 'lsa', 'Manes.04G026300' => 'mes', 'Manes.07G101800' => 'mes', 'Manes.08G003500' => 'mes', 'Manes.08G003600' => 'mes', 'Manes.09G080801' => 'mes', 'Manes.09G080900' => 'mes', 'Manes.10G042200' => 'mes', 'Manes.11G140400' => 'mes', 'Mapoly0015s0153' => 'mpo', 'MBI10_g06753_MAGBIO' => 'mbi', 'MBI10_g30091_MAGBIO' => 'mbi', 'MBI11_g20619_MAGBIO' => 'mbi', 'MBI14_g13893_MAGBIO' => 'mbi', 'MBI14_g17614_MAGBIO' => 'mbi', 'MBI16_g17463_MAGBIO' => 'mbi', 'MBI16_g27095_MAGBIO' => 'mbi', 'MCO11G054' => 'mco', 'MD01G1131500' => 'mdo', 'MD03G1110100' => 'mdo', 'MD03G1110200' => 'mdo', 'MD04G1104300' => 'mdo', 'MD07G1179600' => 'mdo', 'MD11G1123500' => 'mdo', 'MD11G1123900' => 'mdo', 'MD12G1124200' => 'mdo', 'Medtr1g066850' => 'mtr', 'Medtr1g066860' => 'mtr', 'Medtr2g093240' => 'mtr', 'Medtr2g093250' => 'mtr', 'Medtr2g093260' => 'mtr', 'Medtr4g461060' => 'mtr', 'Medtr7g061150' => 'mtr', 'Medtr7g061155' => 'mtr', 'Medtr7g063460' => 'mtr', 'Medtr7g100720' => 'mtr', 'Medtr7g100730' => 'mtr', 'Medtr8g447270' => 'mtr', 'MELO3C005002.2' => 'cme', 'MELO3C009315.2' => 'cme', 'MELO3C009316.2' => 'cme', 'MELO3C014260.2' => 'cme', 'MELO3C025501.2' => 'cme', 'MELO3C025738.2' => 'cme', 'MELO3C025740.2' => 'cme', 'Migut.J00403' => 'egut', 'Migut.J00417' => 'egut', 'Migut.J01145' => 'egut', 'Migut.L01660' => 'egut', 'Migut.L01661' => 'egut', 'Migut.N02628' => 'egut', 'Migut.O00709' => 'egut', 'MSTRG.10297' => 'ama', 'MSTRG.10298' => 'ama', 'MSTRG.17858' => 'ama', 'MSTRG.19137' => 'ama', 'MSTRG.19139' => 'ama', 'MSTRG.21148' => 'ama', 'MSTRG.26725' => 'ama', 'MSTRG.5722' => 'ama', 'Nitab4.5_0000022g0240' => 'nta', 'Nitab4.5_0000754g0110' => 'nta', 'Nitab4.5_0000754g0150' => 'nta', 'Nitab4.5_0000888g0210' => 'nta', 'Nitab4.5_0001142g0100' => 'nta', 'Nitab4.5_0001142g0110' => 'nta', 'Nitab4.5_0003272g0020' => 'nta', 'Nitab4.5_0003895g0040' => 'nta', 'Nitab4.5_0003895g0050' => 'nta', 'Nitab4.5_0003973g0030' => 'nta', 'Nitab4.5_0004924g0010' => 'nta', 'Nitab4.5_0004924g0050' => 'nta', 'Nitab4.5_0005556g0010' => 'nta', 'Nitab4.5_0007369g0020' => 'nta', 'Nitab4.5_0009843g0010' => 'nta', 'Nitab4.5_0009843g0030' => 'nta', 'Nn2g10659' => 'nnu', 'Nn2g10660' => 'nnu', 'Nn2g12995' => 'nnu', 'Nn2g12997' => 'nnu', 'Nn3g16850' => 'nnu', 'Oeu005919.3' => 'oeu', 'Oeu022267.1' => 'oeu', 'Oeu026066.1' => 'oeu', 'Oeu026845.1' => 'oeu', 'Oeu029323.1' => 'oeu', 'Oeu029542.1' => 'oeu', 'Oeu029543.1' => 'oeu', 'Oeu035140.1' => 'oeu', 'Oeu038947.1' => 'oeu', 'Oeu038949.1' => 'oeu', 'Oeu044408.1' => 'oeu', 'Oeu062267.1' => 'oeu', 'Os01g0834100' => 'osa', 'Os01g0834500' => 'osa', 'Os01g0834600' => 'osa', 'Os03g0818400' => 'osa', 'Os05g0122600' => 'osa', 'Os10g0350001' => 'osa', 'Os10g0350450' => 'osa', 'Peaxi162Scf00005g00455' => 'pax', 'Peaxi162Scf00005g04610' => 'pax', 'Peaxi162Scf00389g00623' => 'pax', 'Peaxi162Scf00472g00413' => 'pax', 'Peaxi162Scf00472g00414' => 'pax', 'Peaxi162Scf01604g00017' => 'pax', 'Peaxi162Scf01604g00117' => 'pax', 'Peaxi162Scf01604g10011' => 'pax', 'PGR004G0336' => 'pgr', 'PGR044G0081' => 'pgr', 'PGR102G2478' => 'pgr', 'PGR142G2646' => 'pgr', 'PGR142G3858' => 'pgr', 'PGSC0003DMG400001759' => 'stu', 'PGSC0003DMG400001760' => 'stu', 'PGSC0003DMG400010469' => 'stu', 'PGSC0003DMG400017592' => 'stu', 'PGSC0003DMG400017593' => 'stu', 'PGSC0003DMG400025371' => 'stu', 'PGSC0003DMG400025398' => 'stu', 'Phvul.001G174900' => 'pvu', 'Phvul.001G175000' => 'pvu', 'Phvul.004G098700' => 'pvu', 'Phvul.005G137600' => 'pvu', 'Phvul.007G163700' => 'pvu', 'Phvul.007G163800' => 'pvu', 'Phvul.011G072000' => 'pvu', 'Potri.006G131400' => 'ptr', 'Potri.006G131500' => 'ptr', 'Potri.008G044400' => 'ptr', 'Potri.010G217100' => 'ptr', 'Potri.016G085800' => 'ptr', 'Potri.016G085900' => 'ptr', 'Pp3c11_11070' => 'ppa', 'Pp3c12_25120' => 'ppa', 'Pp3c18_9010' => 'ppa', 'Pp3c2_24130' => 'ppa', 'Pp3c4_3120' => 'ppa', 'Pp3c7_14200' => 'ppa', 'PRCOL_00000649' => 'pco', 'Prupe.6G092700' => 'ppe', 'Prupe.6G092800' => 'ppe', 'Prupe.6G241200' => 'ppe', 'Psat3g044520' => 'psa', 'Psat3g044880' => 'psa', 'Psat5g277040' => 'psa', 'Psat6g070440' => 'psa', 'Psat6g070480' => 'psa', 'Psat7g222360' => 'psa', 'PSO063G1439' => 'pso', 'PSO063G3058' => 'pso', 'PSO339G0908' => 'pso', 'PSO339G3753' => 'pso', 'PSO339G4236' => 'pso', 'PSO339G5185' => 'pso', 'PSO339G6671' => 'pso', 'PSO384G0189' => 'pso', 'PSO384G3520' => 'pso', 'PSO384G3662' => 'pso', 'QL01p036649' => 'qlo', 'QL01p036663' => 'qlo', 'QL07p045248' => 'qlo', 'QL07p045258' => 'qlo', 'QL08p056850' => 'qlo', 'RcHm_v2.0_Chr1g0342271' => 'rch', 'RcHm_v2.0_Chr2g0099711' => 'rch', 'RcHm_v2.0_Chr2g0125251' => 'rch', 'RcHm_v2.0_Chr3g0468851' => 'rch', 'RcHm_v2.0_Chr5g0061061' => 'rch', 'RcHm_v2.0_Chr5g0061071' => 'rch', 'RcHm_v2.0_Chr7g0228161' => 'rch', 'Rhsim01G0220900' => 'rsi', 'Rhsim01G0221000' => 'rsi', 'Rhsim04G0151300' => 'rsi', 'RhsimUnG0117900' => 'rsi', 'RhsimUnG0118000' => 'rsi', 'Sabra06G0103100' => 'sbr', 'Sabra06G0103200' => 'sbr', 'Sabra08G0030700' => 'sbr', 'Sabra10G0168000' => 'sbr', 'Sabra16G0092300' => 'sbr', 'SalBow1G0170' => 'sbo', 'SalBow1G0276' => 'sbo', 'SalBow1G0572' => 'sbo', 'SalBow1G1009' => 'sbo', 'SalBow1G1088' => 'sbo', 'SalBow1G1309' => 'sbo', 'SalBow1G2503' => 'sbo', 'SalBow1G2781' => 'sbo', 'SalBow1G2811' => 'sbo', 'SalBow1G3198' => 'sbo', 'SalBow1G3975' => 'sbo', 'SalBow1G4827' => 'sbo', 'SalBow1G5065' => 'sbo', 'SalBow1G5379' => 'sbo', 'SalBow1G5383' => 'sbo', 'SalBow1G5605' => 'sbo', 'SalBow1G5775' => 'sbo', 'SalBow1G6067' => 'sbo', 'SalBow1G6656' => 'sbo', 'SalBow1G6836' => 'sbo', 'SalBow1G7324' => 'sbo', 'SalBow1G7422' => 'sbo', 'SalBow1G8145' => 'sbo', 'SalBow1G8398' => 'sbo', 'SalBow1G8467' => 'sbo', 'SalBow1G8612' => 'sbo', 'SalBow2G0262' => 'sbo', 'SalBow2G0336' => 'sbo', 'SalBow2G1320' => 'sbo', 'SalBow2G2443' => 'sbo', 'SalBow2G3127' => 'sbo', 'SalBow3G0176' => 'sbo', 'SalBow3G0265' => 'sbo', 'SalBow3G0320' => 'sbo', 'SalBow3G0342' => 'sbo', 'SalBow3G0708' => 'sbo', 'SalBow3G1007' => 'sbo', 'SalBow3G1008' => 'sbo', 'SalBow3G1163' => 'sbo', 'SalBow3G1358' => 'sbo', 'SalBow3G1559' => 'sbo', 'SalBow3G2047' => 'sbo', 'SalBow3G2191' => 'sbo', 'SalBow3G2436' => 'sbo', 'SalBow3G2869' => 'sbo', 'SalBow3G3048' => 'sbo', 'SalBow3G3397' => 'sbo', 'SalBow3G4018' => 'sbo', 'SalBow3G4214' => 'sbo', 'SalBow4G0271' => 'sbo', 'SalBow4G0444' => 'sbo', 'SalBow4G0693' => 'sbo', 'SalBow4G0900' => 'sbo', 'SalBow4G1161' => 'sbo', 'SalBow4G1477' => 'sbo', 'SalBow4G1772' => 'sbo', 'SalBow4G2025' => 'sbo', 'SalBow4G2284' => 'sbo', 'SalBow4G2356' => 'sbo', 'SalBow4G2936' => 'sbo', 'SalBow4G3127' => 'sbo', 'SalBow4G3154' => 'sbo', 'SalBow4G3192' => 'sbo', 'SalBow4G3202' => 'sbo', 'SalBow4G3268' => 'sbo', 'SalBow5G2923' => 'sbo', 'SalBow5G2969' => 'sbo', 'SalBow5G3448' => 'sbo', 'SalBow5G3756' => 'sbo', 'SalBow5G3975' => 'sbo', 'SalBow5G4455' => 'sbo', 'SalBow5G4907' => 'sbo', 'SalBow5G5287' => 'sbo', 'SalBow6G0352' => 'sbo', 'SalBow6G0576' => 'sbo', 'SalBow6G0887' => 'sbo', 'SalBow6G3090' => 'sbo', 'SalBow6G3325' => 'sbo', 'SalBow6G5545' => 'sbo', 'SalBow6G6972' => 'sbo', 'SalBow7G1535' => 'sbo', 'SalBow7G1792' => 'sbo', 'SalBow7G4654' => 'sbo', 'SalBow8G1176' => 'sbo', 'SalBow8G1892' => 'sbo', 'SalBow8G1924' => 'sbo', 'SalBow8G2473' => 'sbo', 'SalBow8G2636' => 'sbo', 'SalBow8G2884' => 'sbo', 'SalBow8G2902' => 'sbo', 'SalBow8G3136' => 'sbo', 'SalBow8G3324' => 'sbo', 'SalBow8G4221' => 'sbo', 'SalBow8G4979' => 'sbo', 'SalBow8G5251' => 'sbo', 'SalBow8G5352' => 'sbo', 'Sc02g0002030' => 'sci', 'Sc20g0004050' => 'sci', 'Sc21g0000010' => 'sci', 'Sc21g0000020' => 'sci', 'Sc21g0000080' => 'sci', 'Sc23g0005720' => 'sci', 'Sed0001101' => 'sed', 'Sed0003838' => 'sed', 'Sed0003857' => 'sed', 'Sed0005305' => 'sed', 'Sed0007815' => 'sed', 'Sed0010849' => 'sed', 'Sed0012931' => 'sed', 'Sed0013980' => 'sed', 'Sed0016366' => 'sed', 'Sed0018289' => 'sed', 'SEGI_00111' => 'sgi', 'SEGI_13076' => 'sgi', 'SGA_v2.0_scaffold126G33896' => 'sas', 'SGA_v2.0_scaffold287G47165' => 'sas', 'SGA_v2.0_scaffold2G00916' => 'sas', 'SGA_v2.0_scaffold35G14160' => 'sas', 'SGA_v2.0_scaffold5181G54607' => 'sas', 'SGA_v2.0_scaffold75G24881' => 'sas', 'SGA_v2.0_scaffold94G28668' => 'sas', 'SGA_v2.0_scaffold97G29170' => 'sas', 'SHI12572' => 'shi', 'SMO340G0262' => 'smo', 'Solyc06g005110.3' => 'sly', 'Solyc06g011510.1' => 'sly', 'Solyc09g007350.3' => 'sly', 'Solyc09g007360.3' => 'sly', 'Solyc10g019030.1' => 'sly', 'Solyc10g084290.2' => 'sly', 'Solyc10g084310.2' => 'sly', 'Solyc10g086020.3' => 'sly', 'Solyc10g086030.2' => 'sly', 'Solyc11g072490.2' => 'sly', 'Sopen09g002250' => 'spe', 'Sopen09g002260' => 'spe', 'Sopen10g008950' => 'spe', 'Sopen10g033740' => 'spe', 'Sopen10g033750' => 'spe', 'Sopen10g035390' => 'spe', 'Sopen10g035400' => 'spe', 'Sopen11g030140' => 'spe', 'Sp1g13110' => 'spa', 'Sp3g08020' => 'spa', 'Sp4g19400' => 'spa', 'Sp6g21840' => 'spa', 'Sp6g39680' => 'spa', 'TAR369G0328' => 'tar', 'TAR369G0985' => 'tar', 'TAR623G0803' => 'tar', 'TAR623G1407' => 'tar', 'TAR633G0231' => 'tar', 'TAR633G2804' => 'tar', 'TAR636G1469' => 'tar', 'THA.LOC104799358' => 'tha', 'THA.LOC104809897' => 'tha', 'THA.LOC104810837' => 'tha', 'THA.LOC104816320' => 'tha', 'THA.LOC104823243' => 'tha', 'THA.LOC104823455' => 'tha', 'THA.LOC104826983' => 'tha', 'Thecc.05G054000' => 'tca', 'Thecc.05G054100' => 'tca', 'Thecc.09G261500' => 'tca', 'Thecc.10G068100' => 'tca', 'Thhalv10010619m.g' => 'esa', 'Thhalv10014965m.g' => 'esa', 'Thhalv10015878m.g' => 'esa', 'Thhalv10016431m.g' => 'esa', 'Thhalv10017715m.g' => 'esa', 'Thhalv10019491m.g' => 'esa', 'Thhalv10021720m.g' => 'esa', 'Thhalv10029182m.g' => 'esa', 'TPR.G11500' => 'tpr', 'TPR.G16563' => 'tpr', 'TPR.G2981' => 'tpr', 'TPR.G30249' => 'tpr', 'TPR.G30252' => 'tpr', 'TPR.G36910' => 'tpr', 'TPR.G36934' => 'tpr', 'TWI31G1142' => 'twi', 'TWI53G1051' => 'twi', 'TWI74G0368' => 'twi', 'TWI74G0401' => 'twi', 'TWI75G0103' => 'twi', 'TWI77G0173' => 'twi', 'TWI77G0455' => 'twi', 'TWI79G0235' => 'twi', 'unitig_26.g9211' => 'ugi', 'unitig_27.g25063' => 'ugi', 'unitig_37.g12889' => 'ugi', 'unitig_46.g18238' => 'ugi', 'unitig_699.g19199' => 'ugi', 'unitig_744.g24673' => 'ugi', 'unitig_744.g24674' => 'ugi', 'unitig_749.g14264' => 'ugi', 'unitig_8.g4332' => 'ugi', 'unitig_8.g4333' => 'ugi', 'vmacro08699' => 'vma', 'vmacro14472' => 'vma', 'vmacro14473' => 'vma', 'vmacro20057' => 'vma', 'vmacro20059' => 'vma', 'VMungo0720G0339' => 'vmu', 'VMungo0720G2549' => 'vmu', 'VMungo1080G0217' => 'vmu', 'VMungo1127G0512' => 'vmu', 'VMungo1383G2025' => 'vmu', 'Zm00001eb045500' => 'zma', 'Zm00001eb062450' => 'zma', 'Zm00001eb089160' => 'zma', 'Zm00001eb148830' => 'zma', 'Zm00001eb148880' => 'zma', 'Zm00001eb160850' => 'zma', 'Zm00001eb211900' => 'zma', 'Zm00001eb265540' => 'zma', 'Zm00001eb289870' => 'zma', 'Zm00001eb301550' => 'zma', 'Zm00001eb351630' => 'zma', 'Zm00001eb368280' => 'zma', 'Zm00001eb400450' => 'zma' ) $gf_id = 'HOM05D000666' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000666' ) $data_identifier = 'HOM05D000666' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 25, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 2, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 12, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 96, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1